UQRUG 59

Overview: drop in session
Questions: renv, Shiny hosting, R version, tmap

Topic: R environments with renv

You can test cloning the example project: https://github.com/stragu/renv_example

From the command line:

git clone https://github.com/stragu/renv_example.git

Then open the project and see what renv does to adapt your local envrionment according to the renv.lock file.

Attendees

Add your name, where you’re from, and why you’re here:

Name	Where are you from?	What brings you here?
Richard	Civil Engineering
Hadi	QAAFI
Stéphane	Library	Here to help and present

Questions and shared resources

• “Cannot move 00LOCK” error when installing packages

  • Issue was related to using Docker on WSL, on which staged install fails.

  • Solution: run this command before installing packages:

  • Sys.setenv(R_INSTALL_STAGED = FALSE)

  • Found on: https://github.com/rstudio/renv/issues/239#issuecomment-553021266

• Building phylogenetic tree with ape and phangorn packages

  • visualisation ideas: https://exts.ggplot2.tidyverse.org/gallery/

  • ggtree:

    • GitHub: https://github.com/YuLab-SMU/ggtree

    • BioConductor: https://www.bioconductor.org/packages/release/bioc/html/ggtree.html

    • book: https://yulab-smu.top/contribution-tree-data/

Shared resources

Resources shared during the meeting.

• Hacky Hour, 3-4 pm every Tuesday (online)

  • https://rcc.uq.edu.au/training-support/meetups

  • ask us for the Zoom link!